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gerrit.avm99963.com / covid19 / 7e562d4b17498b7717e72f1e935a1895ef250281
commit7e562d4b17498b7717e72f1e935a1895ef250281[log] [tgz]
authoravm99963 <me@avm99963.com>Wed Jul 15 23:27:38 2020 +0200
committeravm99963 <me@avm99963.com>Wed Jul 15 23:27:38 2020 +0200
tree97ba13d9d865f4f0faaa08d04b6d58b7ef7ad111
parenta211ad5ce07e728d8b0c7cfcfd2dd5b4656c6c61 [diff]
Bug fix: Increases API results limit

Originally I thought the API wouldn't have a limit as for the number
of rows returned, but it does have a default limit of 1 000 rows.[1]

Therefore, this commit increases this limit to 50 000, which should be
enough.

[1]: https://dev.socrata.com/docs/queries/limit.html

Change-Id: Idbe5a18bce77708bc1f161989a5ce05c10082de4
1 file changed
tree: 97ba13d9d865f4f0faaa08d04b6d58b7ef7ad111
  1. cron/
  2. .gitignore
  3. index.html
  4. README.md
README.md

covid-19

This is the code for https://covid-19.sandbox.avm99963.com, which contains graphs which determine the level of risk of each Catalan health area due to the COVID-19, based on the work of the BIOCOMSC group at the Polytechnic University of Catalonia (UPC).

DISCLAIMER: The data shown in the website might be wrong due to a wrong implementation.

Installation

This software is meant to be used with Apache2 in order to serve a static website including the latest Covid-19 data.

To install it, follow these steps:

  1. Clone this repo in a web directory by running git clone "https://gerrit.avm99963.com/covid19".
  2. Set up a cron script which sets the working directory to covid19/cron and runs the bash generate.bash command every day early in the morning.
    Note: For this, you can run crontab -e and place the following line at the end of the document: 0 2 * * * (cd /path/to/covid19/cron/ && bash generate.bash)

Each day, the generate.bash script will generate the graphs at the covid19/output folder.

You can manually call the bash generate.bash command anytime from the covid19/cron directory in order to manually generate the graphs.

Description of the different files

This is what each file does:

  • index.html: a web accessible document which includes a disclaimer text, a key for the graphs, and the generated graphs themselves.
  • cron folder: a non-web accessible folder which contains programs which ultimately generate the graphs.
  • cron/generate.bash: a Bash script which orchestrates all the other programs in the folder in order to generate the graphs.
  • cron/generateData.php: a PHP script which extracts the Covid-19 data from the Generalitat de Catalunya's API and analyzes that data to generate the ρ7 and IA14 values needed by cron/generateGraphs.gnu.
  • cron/generateGraphs.gnu: a gnuplot script which generates the graphs with the data which has been provided by the cron/generateData.php. It uses the helper script cron/plot.gnu.
  • output folder: a folder created by the generate.bash script where the generated graphs are saved.